magmap.settings package¶
Submodules¶
- magmap.settings.atlas_prof module
- magmap.settings.config module
ABAKeysAPP_NAMEAtlasLabelsAtlasMetricsAtlasMetrics.CHANNELAtlasMetrics.CONDITIONAtlasMetrics.DSC_ATLAS_LABELSAtlasMetrics.DSC_ATLAS_LABELS_HEMAtlasMetrics.DSC_ATLAS_SAMPLEAtlasMetrics.DSC_ATLAS_SAMPLE_CURAtlasMetrics.DSC_LABELS_ORIG_NEW_COMBINEDAtlasMetrics.DSC_LABELS_ORIG_NEW_INDIVAtlasMetrics.DSC_SAMPLE_LABELSAtlasMetrics.LAT_UNLBL_PLANESAtlasMetrics.LAT_UNLBL_VOLAtlasMetrics.LEVELAtlasMetrics.OFFSETAtlasMetrics.PARENTAtlasMetrics.REGIONAtlasMetrics.REGION_ABBRAtlasMetrics.REGION_NAMEAtlasMetrics.SAMPLEAtlasMetrics.SIDEAtlasMetrics.SIMILARITY_METRICAtlasMetrics.SIZEAtlasMetrics.VOL_ATLASAtlasMetrics.VOL_LABELS
ClassifierDataCmapsDEFAULT_SAVEFIGDFTasksDNS_REVERSEDataClassDataClassProtocolDocsURLsFORMATS_3DHemSidesICON_PATHItkSnapLabelsLoadDataLoadIOMetaKeysMetricGroupsPLANEPOS_THRESHPREFS_PATHPlot2DTypesPlotLabelsPlotLabels.ALPHAS_CHLPlotLabels.ANNOT_COLPlotLabels.BACKGROUNDPlotLabels.CONDITIONPlotLabels.DPIPlotLabels.DROP_DUPSPlotLabels.ERR_COLPlotLabels.ERR_COL_ABSPlotLabels.GROUP_COLPlotLabels.HLINEPlotLabels.ID_COLPlotLabels.LAYOUTPlotLabels.LEGEND_NAMESPlotLabels.MARGINPlotLabels.MARKERPlotLabels.NAN_COLORPlotLabels.PADDINGPlotLabels.ROTATIONPlotLabels.SCALE_BARPlotLabels.SIZEPlotLabels.TEXT_POSPlotLabels.TITLEPlotLabels.VSPAN_COLPlotLabels.VSPAN_FORMATPlotLabels.WT_COLPlotLabels.X_COLPlotLabels.X_LABELPlotLabels.X_LIMPlotLabels.X_SCALEPlotLabels.X_TICK_LABELSPlotLabels.X_UNITPlotLabels.Y_COLPlotLabels.Y_LABELPlotLabels.Y_LIMPlotLabels.Y_SCALEPlotLabels.Y_TICK_LABELSPlotLabels.Y_UNITPlotLabels.ZOOM_SHIFT
PreProcessKeysProcessTypesProcessTypes.ANIMATEDProcessTypes.CLASSIFYProcessTypes.COLOC_MATCHProcessTypes.DETECTProcessTypes.DETECT_COLOCProcessTypes.EXPORT_BLOBSProcessTypes.EXPORT_PLANESProcessTypes.EXPORT_PLANES_CHANNELSProcessTypes.EXPORT_RAWProcessTypes.EXPORT_ROISProcessTypes.EXPORT_TIFProcessTypes.EXTRACTProcessTypes.IMPORT_ONLYProcessTypes.LOADProcessTypes.PREPROCESSProcessTypes.TRANSFORM
RegNamesRegNames.COMBINEDRegNames.IMG_ATLASRegNames.IMG_ATLAS_EDGERegNames.IMG_ATLAS_LOGRegNames.IMG_ATLAS_MASKRegNames.IMG_ATLAS_PRECURRegNames.IMG_BORDERSRegNames.IMG_EXPRegNames.IMG_EXP_MASKRegNames.IMG_GROUPEDRegNames.IMG_HEAT_COLOCRegNames.IMG_HEAT_MAPRegNames.IMG_LABELSRegNames.IMG_LABELS_DIFFRegNames.IMG_LABELS_DISTRegNames.IMG_LABELS_EDGERegNames.IMG_LABELS_EDGE_LEVELRegNames.IMG_LABELS_INTERIORRegNames.IMG_LABELS_LEVELRegNames.IMG_LABELS_MARKERSRegNames.IMG_LABELS_PRECURRegNames.IMG_LABELS_SUBSEGRegNames.IMG_LABELS_TRANSRegNames.IMG_LABELS_TRUNCRegNames.IMG_LABELS_TRUNC_PRECUR
RegSuffixesRegisterTypesRegisterTypes.CLUSTER_BLOBSRegisterTypes.COEFVARRegisterTypes.COMBINE_COLSRegisterTypes.CONVERT_ITKSNAP_LABELSRegisterTypes.EXPORT_COMMON_LABELSRegisterTypes.EXPORT_METRICS_COMPACTNESSRegisterTypes.EXPORT_REGIONSRegisterTypes.GROUPRegisterTypes.IMPORT_ATLASRegisterTypes.LABELS_DIFFRegisterTypes.LABELS_DIFF_STATSRegisterTypes.LABELS_DISTRegisterTypes.MAKE_DENSITY_IMAGESRegisterTypes.MAKE_EDGE_IMAGESRegisterTypes.MAKE_EDGE_IMAGES_EXPRegisterTypes.MAKE_LABELS_LEVELRegisterTypes.MAKE_SUBSEGSRegisterTypes.MEAS_IMPROVEMENTRegisterTypes.MELT_COLSRegisterTypes.MERGE_ATLAS_SEGSRegisterTypes.MERGE_ATLAS_SEGS_EXPRegisterTypes.MERGE_IMAGESRegisterTypes.MERGE_IMAGES_CHANNELSRegisterTypes.NEW_ATLASRegisterTypes.OVERLAYSRegisterTypes.PIVOT_CONDSRegisterTypes.PLOT_CLUSTER_BLOBSRegisterTypes.PLOT_INTENS_NUCRegisterTypes.PLOT_KNNSRegisterTypes.PLOT_LATERAL_UNLABELEDRegisterTypes.PLOT_REGION_DEVRegisterTypes.PLOT_SMOOTHING_METRICSRegisterTypes.REGISTER_REVRegisterTypes.SINGLERegisterTypes.SMOOTHING_METRICS_AGGRRegisterTypes.SMOOTHING_PEAKSRegisterTypes.VOL_COMPARERegisterTypes.VOL_STATSRegisterTypes.ZSCORES
STR_FNSUFFIX_BLOBSSUFFIX_BLOB_CLUSTERSSUFFIX_IMAGE5DSUFFIX_METASUFFIX_SUBIMGSmoothingMetricsSmoothingMetrics.COMPACTIONSmoothingMetrics.COMPACTNESSSmoothingMetrics.COMPACTNESS_CVSmoothingMetrics.COMPACTNESS_ORIGSmoothingMetrics.COMPACTNESS_SDSmoothingMetrics.DISPLACEMENTSmoothingMetrics.FILTER_SIZESmoothingMetrics.LABEL_LOSSSmoothingMetrics.SA_VOLSmoothingMetrics.SA_VOL_FRACSmoothingMetrics.SA_VOL_ORIGSmoothingMetrics.SM_QUALITYSmoothingMetrics.VOLSmoothingMetrics.VOL_ORIG
SmoothingModesThemesTransformsTruthDBTruthDBModesURI_SCHEMEVerbosityapp_dirblobschannelclassifiercmap_labelsfilenamesformat_import_err()get_roi_profile()grid_search_profileimage5d_ioimg5dlabels_imglabels_img_origlabels_img_sitklabels_levellabels_metadatalabels_reflabels_scalingload_labelslog_pathloggermagnificationmatplotlib_stylemeta_dictmetadata_pathsmetadatasplot_labelsprefixprefix_outprefixesprefixes_outprefsproc_typerc_paramsreg_suffixesrgbsavefigseriesseries_listshowsuffixtruth_db_modeunit_factoruser_app_dirsverboseverbosityzoom
- magmap.settings.grid_search_prof module
- magmap.settings.logs module
- magmap.settings.prefs_prof module
- magmap.settings.profiles module
RegKeysSettingsDictSettingsDict.DEFAULT_NAMESettingsDict.NAME_KEYSettingsDict.PATH_PROFILESSettingsDict.__repr__()SettingsDict.add_profiles()SettingsDict.check_file_changed()SettingsDict.get_files()SettingsDict.get_profile()SettingsDict.is_identical_settings()SettingsDict.modify_settings()SettingsDict.refresh_profile()SettingsDict.save_settings()
- magmap.settings.roi_prof module