magmap.settings.atlas_prof module

Profile settings for processing regions of interests.

These setting typically involve high-resolution such as microscopy images.

class magmap.settings.atlas_prof.AtlasProfile(*args, **kwargs)

Bases: SettingsDict

Atlas profile dictionary.

Variables:

PATH_PREFIX (str) – Prefix for atlas profile files.

PATH_PREFIX = 'atlas'

static get_files(profiles_dir=None, filename_prefix=None)

Get atlas profile files.

Parameters:

• profiles_dir (str) – Directory from which to get files; defaults to None.

• filename_prefix (str) – Only get files starting with this string; defaults to None to use PATH_PREFIX.

Returns:

List of files in profiles_dir matching the given filename_prefix.

Return type:

List[str]

class magmap.settings.atlas_prof.RegParamMap(*args, **kwargs)

Bases: dict

Registration parameter map dictionary initialized with required keys.