magmap.stats package

Submodules

• magmap.stats.atlas_stats module
  • calc_sens_ppv()
  • meas_dice()
  • meas_improvement()
  • meas_landmark_dist()
  • meas_plot_coefvar()
  • meas_plot_zscores()
  • plot_clusters_by_label()
  • plot_intensity_nuclei()
  • plot_region_development()
  • plot_unlabeled_hemisphere()
  • smoothing_peak()
• magmap.stats.clustering module
  • ClusterByLabel
    • ClusterByLabel.blobs
    • ClusterByLabel.cluster_by_label()
    • ClusterByLabel.cluster_within_label()
  • cluster_blobs()
  • cluster_dbscan_metrics()
  • knn_dist()
  • plot_knns()
• magmap.stats.mlearn module
  • GridSearchStats
    • GridSearchStats.FDR
    • GridSearchStats.FN
    • GridSearchStats.FP
    • GridSearchStats.PARAM
    • GridSearchStats.POS
    • GridSearchStats.PPV
    • GridSearchStats.SENS
    • GridSearchStats.TN
    • GridSearchStats.TP
  • grid_search()
  • parse_grid_stats()
• magmap.stats.vols module
  • LabelMetrics
    • LabelMetrics.CoefVarIntens
    • LabelMetrics.CoefVarNuc
    • LabelMetrics.Compactness
    • LabelMetrics.Density
    • LabelMetrics.DensityIntens
    • LabelMetrics.Dist
    • LabelMetrics.EdgeDistMean
    • LabelMetrics.EdgeDistSum
    • LabelMetrics.EdgeSize
    • LabelMetrics.EntropyIntensity
    • LabelMetrics.HighIntensity
    • LabelMetrics.Intensity
    • LabelMetrics.LowIntensity
    • LabelMetrics.MeanIntensity
    • LabelMetrics.MeanNuclei
    • LabelMetrics.MedIntensity
    • LabelMetrics.NucClusLarg
    • LabelMetrics.NucClusNoise
    • LabelMetrics.NucCluster
    • LabelMetrics.NucDSC
    • LabelMetrics.NucOut
    • LabelMetrics.Nuclei
    • LabelMetrics.RegDensityMean
    • LabelMetrics.RegNucMean
    • LabelMetrics.RegVolMean
    • LabelMetrics.Region
    • LabelMetrics.SurfaceArea
    • LabelMetrics.VarIntensDiff
    • LabelMetrics.VarIntensIn
    • LabelMetrics.VarIntensMatch
    • LabelMetrics.VarIntensOut
    • LabelMetrics.VarIntensity
    • LabelMetrics.VarNucIn
    • LabelMetrics.VarNucMatch
    • LabelMetrics.VarNucOut
    • LabelMetrics.VarNuclei
    • LabelMetrics.VolAlt
    • LabelMetrics.VolAltPx
    • LabelMetrics.VolDSC
    • LabelMetrics.VolOut
    • LabelMetrics.VolPx
    • LabelMetrics.Volume
  • LabelToEdge
    • LabelToEdge.find_label_edge()
    • LabelToEdge.footprint
    • LabelToEdge.labels_img
    • LabelToEdge.make_labels_edge()
  • MeasureLabel
    • MeasureLabel.atlas_img_np
    • MeasureLabel.blobs
    • MeasureLabel.df
    • MeasureLabel.dist_to_orig
    • MeasureLabel.heat_map
    • MeasureLabel.label_metrics()
    • MeasureLabel.labels_edge
    • MeasureLabel.labels_img_np
    • MeasureLabel.labels_interior
    • MeasureLabel.measure_counts()
    • MeasureLabel.measure_edge_dist()
    • MeasureLabel.measure_point_cloud()
    • MeasureLabel.measure_shapes()
    • MeasureLabel.measure_variation()
    • MeasureLabel.region_props()
    • MeasureLabel.set_data()
    • MeasureLabel.spacing
    • MeasureLabel.subseg
  • MeasureLabelOverlap
    • MeasureLabelOverlap.df
    • MeasureLabelOverlap.heat_map
    • MeasureLabelOverlap.labels_imgs
    • MeasureLabelOverlap.measure_overlap()
    • MeasureLabelOverlap.set_data()
  • MetricCombos
    • MetricCombos.COEFVAR_INTENS
    • MetricCombos.COEFVAR_NUC
    • MetricCombos.HOMOGENEITY
  • get_metric_weight_col()
  • get_single_label()
  • labels_distance()
  • map_meas_to_labels()
  • measure_labels_metrics()
  • measure_labels_overlap()