magmap.plot package

Submodules

• magmap.plot.colormaps module
  • DiscreteColormap
    • DiscreteColormap.convert_img_labels()
    • DiscreteColormap.make_cmap()
    • DiscreteColormap.modified_cmap()
  • DiscreteModes
    • DiscreteModes.GRID
    • DiscreteModes.RANDOMN
  • discrete_colormap()
  • get_borders_colormap()
  • get_cmap()
  • get_labels_discrete_colormap()
  • make_binary_cmap()
  • make_dark_linear_cmap()
  • setup_cmaps()
  • setup_colormaps()
  • setup_labels_cmap()
• magmap.plot.plot_2d module
  • decorate_plot()
  • main()
  • plot_bars()
  • plot_catplot()
  • plot_histogram()
  • plot_image()
  • plot_lines()
  • plot_overlays()
  • plot_overlays_reg()
  • plot_probability()
  • plot_roc()
  • plot_scatter()
  • plot_swarm()
  • post_plot()
  • setup_style()
• magmap.plot.plot_3d module
  • build_ground_truth()
  • deconvolve()
  • denoise_roi()
  • get_isotropic_vis()
  • pad_img()
  • prepare_roi()
  • prepare_subimg()
  • remap_intensity()
  • replace_vol()
  • roi_center_to_offset()
  • saturate_roi()
  • setup_channels()
  • show_surface_labels()
  • threshold()
• magmap.plot.plot_support module
  • ImageOverlayer
    • ImageOverlayer.RotTransform
      • ImageOverlayer.RotTransform.transform
      • ImageOverlayer.RotTransform.xlims
      • ImageOverlayer.RotTransform.ylims
    • ImageOverlayer.additive_blend
    • ImageOverlayer.annotate_labels()
    • ImageOverlayer.aspect
    • ImageOverlayer.ax
    • ImageOverlayer.ignore_invis
    • ImageOverlayer.imshow_multichannel()
    • ImageOverlayer.labels_annots
    • ImageOverlayer.origin
    • ImageOverlayer.overlay_images()
    • ImageOverlayer.remove_labels()
    • ImageOverlayer.rgb
    • ImageOverlayer.setup_transform()
  • ImageSyncMixin
    • ImageSyncMixin.additive_blend
    • ImageSyncMixin.axes_exit()
    • ImageSyncMixin.edited
    • ImageSyncMixin.enable_btn()
    • ImageSyncMixin.fig
    • ImageSyncMixin.get_img_display_settings()
    • ImageSyncMixin.img5d
    • ImageSyncMixin.on_close()
    • ImageSyncMixin.plot_eds
    • ImageSyncMixin.save_fig()
    • ImageSyncMixin.set_labels_level()
    • ImageSyncMixin.set_show_crosslines()
    • ImageSyncMixin.set_show_labels()
    • ImageSyncMixin.show_labels_annots()
    • ImageSyncMixin.toggle_btn()
    • ImageSyncMixin.update_imgs_display()
    • ImageSyncMixin.update_max_intens_proj()
  • add_scale_bar()
  • add_vspans()
  • alpha_blend_intersection()
  • extract_planes()
  • fit_frame_to_image()
  • get_aspect_ratio()
  • get_downsample_max_sizes()
  • get_plane_axis()
  • hide_axes()
  • max_plane()
  • save_fig()
  • scale_axes()
  • scale_xticks()
  • scroll_plane()
  • set_overview_title()
  • set_scinot()
  • setup_fig()
  • setup_images_for_plane()
  • setup_vspans()
  • show()
  • transpose_images()