magmap.gui package

Submodules

• magmap.gui.atlas_editor module
  • AtlasEditor
    • AtlasEditor.alpha_reset()
    • AtlasEditor.alpha_update()
    • AtlasEditor.color_picker_changed()
    • AtlasEditor.get_save_path()
    • AtlasEditor.interpolate()
    • AtlasEditor.on_key_press()
    • AtlasEditor.planes
    • AtlasEditor.refresh_images()
    • AtlasEditor.save_atlas()
    • AtlasEditor.scroll_overview()
    • AtlasEditor.show_atlas()
    • AtlasEditor.toggle_edit_mode()
    • AtlasEditor.update_color_picker()
    • AtlasEditor.update_coords()
    • AtlasEditor.view_subimg()
  • InterpolatePlanes
    • InterpolatePlanes.bounds
    • InterpolatePlanes.interpolate()
    • InterpolatePlanes.update_btn()
    • InterpolatePlanes.update_plane()
• magmap.gui.atlas_threads module
  • AnnotateLabels
    • AnnotateLabels.run()
    • AnnotateLabels.signal
    • AnnotateLabels.signal_prog
    • AnnotateLabels.update_prog()
  • RemapLevelThread
    • RemapLevelThread.run()
    • RemapLevelThread.signal
    • RemapLevelThread.signal_prog
    • RemapLevelThread.update_prog()
• magmap.gui.event_handlers module
  • FileOpenHandler
    • FileOpenHandler.eventFilter()
• magmap.gui.image_viewer module
  • Blitter
    • Blitter.add_artist()
    • Blitter.artists
    • Blitter.fig
    • Blitter.on_draw()
    • Blitter.update()
• magmap.gui.import_threads module
• magmap.gui.pixel_display module
  • PixelDisplay
    • PixelDisplay.__call__()
    • PixelDisplay.get_msg()
• magmap.gui.plot_editor module
  • PlotAxImg
    • PlotAxImg.img
    • PlotAxImg.input_img
    • PlotAxImg.rgb
  • PlotEditor
    • PlotEditor.ALPHA_DEFAULT
    • PlotEditor.alpha
    • PlotEditor.alpha_img3d
    • PlotEditor.alpha_updater()
    • PlotEditor.blitter
    • PlotEditor.change_brightness_contrast()
    • PlotEditor.cmap_labels
    • PlotEditor.connect()
    • PlotEditor.disconnect()
    • PlotEditor.draw_crosslines()
    • PlotEditor.edit_mode
    • PlotEditor.fn_update_coords
    • PlotEditor.get_displayed_img()
    • PlotEditor.get_plot_ax_img()
    • PlotEditor.img3d
    • PlotEditor.img3d_labels
    • PlotEditor.label_motion_thresh
    • PlotEditor.labels_level
    • PlotEditor.nav_motion_thresh
    • PlotEditor.on_axes_exit()
    • PlotEditor.on_key_press()
    • PlotEditor.on_motion()
    • PlotEditor.on_press()
    • PlotEditor.on_release()
    • PlotEditor.overlayer
    • PlotEditor.plane
    • PlotEditor.plot_ax_imgs
    • PlotEditor.refresh_img3d_labels()
    • PlotEditor.scroll_overview()
    • PlotEditor.set_show_label()
    • PlotEditor.show_labels()
    • PlotEditor.show_overview()
    • PlotEditor.show_roi()
    • PlotEditor.translate_coord()
    • PlotEditor.update_alpha_blend()
    • PlotEditor.update_coord()
    • PlotEditor.update_img_display()
    • PlotEditor.update_plane_slider()
    • PlotEditor.update_plot_ax_img_display()
    • PlotEditor.view_subimg()
• magmap.gui.roi_editor module
  • DraggableCircle
    • DraggableCircle.BLOB_COLORS
    • DraggableCircle.CUT
    • DraggableCircle.connect()
    • DraggableCircle.disconnect()
    • DraggableCircle.on_motion()
    • DraggableCircle.on_pick()
    • DraggableCircle.on_press()
    • DraggableCircle.on_release()
    • DraggableCircle.picked
    • DraggableCircle.remove_self()
  • ROIEditor
    • ROIEditor.CircleStyles
      • ROIEditor.CircleStyles.CIRCLES
      • ROIEditor.CircleStyles.FULL_ANNOTATION
      • ROIEditor.CircleStyles.NO_CIRCLES
      • ROIEditor.CircleStyles.REPEAT_CIRCLES
    • ROIEditor.ROI_COLS
    • ROIEditor.ZLevels
      • ROIEditor.ZLevels.BOTTOM
      • ROIEditor.ZLevels.MIDDLE
      • ROIEditor.ZLevels.TOP
    • ROIEditor.additive_blend
    • ROIEditor.get_save_path()
    • ROIEditor.image5d
    • ROIEditor.plot_2d_stack()
    • ROIEditor.plot_roi()
    • ROIEditor.set_circle_visibility()
    • ROIEditor.show_colocalized_blobs()
    • ROIEditor.show_subplot()
    • ROIEditor.update_imgs_display()
    • ROIEditor.update_max_intens_proj()
• magmap.gui.verifier_editor module
  • VerifierEditor
    • VerifierEditor.BlobView
      • VerifierEditor.BlobView.blob
      • VerifierEditor.BlobView.plot_ed
    • VerifierEditor.fn_update_blob
    • VerifierEditor.show_fig()
    • VerifierEditor.show_views()
• magmap.gui.vis_3d module
  • Vis3D
    • Vis3D.clear_scene()
    • Vis3D.plot_2d_shadows()
    • Vis3D.plot_3d_points()
    • Vis3D.plot_3d_surface()
    • Vis3D.show_blobs()
    • Vis3D.show_roi_outline()
    • Vis3D.update_img_display()
• magmap.gui.vis_handler module
  • StaleFlags
    • StaleFlags.IMAGE
    • StaleFlags.ROI
  • ViewerTabs
    • ViewerTabs.ATLAS_ED
    • ViewerTabs.MAYAVI
    • ViewerTabs.ROI_ED
  • VisHandler
    • VisHandler.closed()
    • VisHandler.init()
    • VisHandler.object__import_feedback_changed()
    • VisHandler.object__profiles_reset_prefs_changed()
    • VisHandler.object__roi_feedback_changed()
    • VisHandler.object_mpl_fig_active_changed()
    • VisHandler.object_select_controls_tab_changed()
    • VisHandler.scroll_to_bottom()
• magmap.gui.visualizer module