magmap.io package

Submodules

• magmap.io.cli module
• magmap.io.df_io module
  • add_cols_df()
  • append_cols()
  • coefvar_df()
  • combine_cols()
  • cond_to_cols_df()
  • data_frames_to_csv()
  • df_add()
  • df_div()
  • df_subtract()
  • dict_to_data_frame()
  • exps_by_regions()
  • filter_dfs_on_vals()
  • func_to_paired_cols()
  • join_dfs()
  • main()
  • melt_cols()
  • merge_csvs()
  • merge_excels()
  • normalize_df()
  • pivot_with_conditions()
  • print_data_frame()
  • replace_vals()
  • weight_mean()
  • weight_std()
  • zscore_df()
• magmap.io.export_regions module
• magmap.io.export_rois module
• magmap.io.export_stack module
• magmap.io.importer module
• magmap.io.libmag module
  • add_missing_keys()
  • backup_file()
  • combine_arrs()
  • combine_paths()
  • compact_float()
  • convert_bin_magnitude()
  • convert_indices_to_int()
  • coords_for_indexing()
  • copy_backup()
  • create_symlink()
  • crop_mid_str()
  • dtype_within_range()
  • enum_dict_aslist()
  • enum_names_aslist()
  • flatten()
  • format_bytes()
  • format_num()
  • get_dict_keys_from_val()
  • get_dtype_info()
  • get_enum()
  • get_filename_without_ext()
  • get_git_commit()
  • get_if_within()
  • get_int()
  • get_version()
  • insert_before_ext()
  • is_binary()
  • is_int()
  • is_nan()
  • is_number()
  • is_seq()
  • last_lines()
  • log_once()
  • make_acronym()
  • make_out_path()
  • match_ext()
  • normalize()
  • npstr_to_array()
  • pad_seq()
  • print_compact()
  • printcb()
  • printv()
  • remove_file()
  • replace_seq()
  • roll_elements()
  • scale_slice()
  • series_as_str()
  • show_full_arrays()
  • splice_before()
  • splitext()
  • str_to_disp()
  • swap_elements()
  • to_seq()
  • transpose_1d()
  • transpose_1d_rev()
  • truncate_decimal_digit()
  • warn()
• magmap.io.load_env module
  • ARGS_MAGMAP
  • ENV_NAME
  • VENV_DIR
  • is_conda_activated()
  • is_venv_activated()
  • launch_magmap()
  • launch_subprocess()
  • log_uncaught_exception()
  • main()
• magmap.io.naming module
  • get_roi_path()
  • make_subimage_name()
• magmap.io.np_io module
  • Image5d
    • Image5d.rgb
  • find_scaling()
  • get_num_channels()
  • img_to_blobs_path()
  • read_np_archive()
  • read_tif()
  • setup_images()
  • write_raw_file()
  • write_tif()
• magmap.io.packaging module
  • get_pkg_egg()
  • get_pkg_path()
• magmap.io.sitk_io module
• magmap.io.sqlite module
• magmap.io.subproc_io module
  • compress_file()
  • decompress_file()
  • test_compression()
• magmap.io.yaml_io module
  • load_yaml()
  • save_yaml()